STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_2807roadblock/LC7 family protein. (127 aa)    
Predicted Functional Partners:
OSCT_2808
TPR repeat-containing protein.
 
     0.852
OSCT_0998
Small GTP-binding protein.
 
 
 0.790
OSCT_0235
Small GTP-binding protein.
 
 
 0.789
OSCT_2820
Tetratricopeptide TPR_2 repeat protein.
  
     0.739
OSCT_2435
TPR repeat-containing protein.
  
     0.694
OSCT_0218
Hypothetical protein.
 
 
 0.693
OSCT_2557
Mutual gliding protein A.
 
 
 0.677
OSCT_0216
roadblock/LC7 family protein.
  
     0.657
OSCT_2442
Hypothetical protein.
  
     0.646
OSCT_2505
Hypothetical protein.
  
     0.640
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.