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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_2813Hypothetical protein. (225 aa)    
Predicted Functional Partners:
OSCT_2814
Pentapeptide repeat-containing protein.
       0.746
OSCT_2812
PUCC protein.
  
    0.723
OSCT_2206
GAF sensor signal transduction histidine kinase.
  
 
  0.602
OSCT_2630
Multi-sensor signal transduction histidine kinase.
  
 
  0.598
trpA
Tryptophan synthase, alpha subunit; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family.
       0.521
OSCT_1416
Two-component hybrid sensor and regulator.
  
 
  0.499
OSCT_2834
Two-component hybrid sensor and regulator.
  
 
  0.499
OSCT_2633
Multi-sensor hybrid histidine kinase.
    
  0.479
OSCT_1227
PAS sensor protein.
    
  0.469
OSCT_1470
Hypothetical protein.
   
    0.457
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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