Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_2813Hypothetical protein. (225 aa)    
Predicted Functional Partners:
OSCT_2814
Pentapeptide repeat-containing protein.
       0.740
OSCT_2812
PUCC protein.
  
    0.722
trpA
Tryptophan synthase, alpha subunit; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family.
       0.521
OSCT_2206
GAF sensor signal transduction histidine kinase.
  
 
  0.502
OSCT_2630
Multi-sensor signal transduction histidine kinase.
  
 
  0.501
OSCT_0105
Magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase.
  
 
  0.443
OSCT_1186
Radical SAM domain-containing protein.
  
 
  0.443
OSCT_1511
Elongator protein 3/MiaB/NifB.
  
 
  0.443
OSCT_1512
Radical SAM domain protein.
  
 
  0.443
OSCT_2493
Radical SAM domain-containing protein.
  
 
  0.443
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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