STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_2820Tetratricopeptide TPR_2 repeat protein. (1091 aa)    
Predicted Functional Partners:
OSCT_1730
TPR repeat-containing protein.
 
 
 0.937
OSCT_1984
TPR repeat-containing protein.
 
 0.937
OSCT_2082
Peptidase S1 and S6 chymotrypsin/Hap.
 
 0.928
OSCT_2808
TPR repeat-containing protein.
 
 
 0.884
OSCT_2435
TPR repeat-containing protein.
 
 
 0.883
OSCT_2703
Multi-sensor hybrid histidine kinase.
 
 
 0.883
OSCT_1437
TPR repeat-containing protein.
 
 
  0.865
OSCT_2849
Response regulator receiver.
 
  
 0.822
OSCT_2796
TPR repeat-containing protein.
 
  
 0.814
OSCT_2630
Multi-sensor signal transduction histidine kinase.
 
    0.807
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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