STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_2826Circadian clock protein KaiC. (505 aa)    
Predicted Functional Partners:
OSCT_2827
KaiB domain-containing protein.
 
 
 
 0.976
OSCT_2040
KaiB domain protein.
 
 
 
 0.950
OSCT_2828
PAS sensor protein.
 
     0.671
OSCT_2825
Diguanylate cyclase.
       0.652
OSCT_0036
Sensory transduction histidine kinase.
   
 
 0.531
OSCT_2223
PAS/PAC sensor signal transduction histidine kinase.
   
 
 0.531
OSCT_0987
Multi-sensor Signal transduction histidine kinase.
   
 
 0.495
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.