STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_2844Histone deacetylase superfamily. (349 aa)    
Predicted Functional Partners:
OSCT_2022
SNF2-related helicase.
  
 
 0.953
OSCT_0556
Signal transduction histidine kinase regulating C4-dicarboxylate transport system.
  
 0.923
OSCT_2841
Hypothetical protein.
   
 0.867
OSCT_2252
AAA family ATPase, CDC48 subfamily protein; Belongs to the AAA ATPase family.
 
 
 0.814
hisA
Hypothetical protein.
   
   0.798
cobB
Silent information regulator protein Sir2; Belongs to the sirtuin family. Class III subfamily.
    
 
 0.793
OSCT_2524
AAA ATPase, central region.
   
 0.786
OSCT_2334
Histamine N-methyltransferase A.
    
 0.772
hisH
Imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the synthesis of IGP and AICAR. The resulting ammonia molecule is channeled to the active site of HisF.
       0.758
OSCT_0553
Hypothetical protein.
   
 0.752
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.