Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Gene Fusion
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Co-expression
Experiments
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[Homology]
Score
OSCT_2844Histone deacetylase superfamily. (349 aa)    
Predicted Functional Partners:
OSCT_2022
SNF2-related helicase.
  
 
 0.904
OSCT_2252
AAA family ATPase, CDC48 subfamily protein; Belongs to the AAA ATPase family.
 
 
 0.888
OSCT_2524
AAA ATPase, central region.
   
 0.870
OSCT_2841
Hypothetical protein.
   
 0.851
OSCT_1424
AMP-dependent synthetase and ligase.
  
 
 0.850
cobB
Silent information regulator protein Sir2; Belongs to the sirtuin family. Class III subfamily.
    
 0.849
OSCT_0392
Immunoglobulin I-set domain protein.
   
 0.826
atpD
F0F1 ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.
    
 0.816
OSCT_2791
Hypothetical protein.
   
 
 0.816
OSCT_0748
Serine protease; Belongs to the peptidase S8 family.
    
  0.802
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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