STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_2867TPR repeat-containing protein. (485 aa)    
Predicted Functional Partners:
OSCT_2868
Hypothetical protein.
       0.773
OSCT_2613
Hypothetical protein.
    
 0.665
OSCT_3007
Adenylyl cyclase class-3/4/guanylyl cyclase.
  
 
  0.514
OSCT_2612
Multi-sensor signal transduction histidine kinase.
     
  0.494
OSCT_2760
Type II secretion system protein.
  
 
 0.485
OSCT_2189
Lytic transglycosylase catalytic.
  
  
 0.484
OSCT_2761
Type II secretion system protein.
  
 
 0.475
OSCT_0339
Serine/threonine protein kinase with FHA domain protein.
  
 
  0.440
OSCT_0386
Transcriptional regulator domain-containing protein.
  
 
  0.438
OSCT_1393
Transcriptional regulator domain-containing protein.
  
 
  0.438
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.