STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_2900Hypothetical protein. (230 aa)    
Predicted Functional Partners:
OSCT_2899
Glycosyl transferase family 2.
 
 
 0.894
OSCT_2898
Glycosyl transferase, group 1.
 
 
   0.827
OSCT_2902
NAD-dependent epimerase/dehydratase.
 
 
  0.818
OSCT_1227
PAS sensor protein.
   
 0.798
OSCT_2901
Polysaccharide biosynthesis protein.
       0.774
OSCT_2903
Glycosyl transferase family 2.
   
   0.757
OSCT_2221
Multi-sensor hybrid histidine kinase.
    
 0.732
OSCT_1310
PAS fold family protein.
   
 0.729
OSCT_0739
Sensory box histidine kinase/response regulator.
   
 0.725
OSCT_0648
GAF sensor hybrid histidine kinase.
    
 0.591
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.