STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_2914Amine oxidase. (514 aa)    
Predicted Functional Partners:
OSCT_0944
Squalene/phytoene synthase.
 
 
 0.796
OSCT_2913
Glycosyl transferase family protein.
       0.678
OSCT_0730
FAD dependent oxidoreductase.
 
  
 0.627
OSCT_2992
Plastoquinol--plastocyanin reductase.
  
  
 0.609
OSCT_3106
Geranylgeranyl reductase.
 
  
 0.558
OSCT_2912
Hypothetical protein.
       0.557
OSCT_2915
Methyltransferase type 11.
    
  0.470
OSCT_1078
Putative lipase.
  
     0.469
OSCT_1079
Putative lipase.
  
     0.468
hflX
GTP-binding proten HflX; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family.
       0.449
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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