STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_2949Cell division FtsK/SpoIIIE. (812 aa)    
Predicted Functional Partners:
OSCT_0049
Stage 0 sporulation protein J; Belongs to the ParB family.
  
   
 0.662
OSCT_1022
parB-like partition protein; Belongs to the ParB family.
  
   
 0.661
OSCT_3087
parB-like partition protein; Belongs to the ParB family.
  
   
 0.621
OSCT_2950
Hypothetical protein.
  
    0.565
OSCT_0243
Hypothetical protein.
 
   
 0.515
OSCT_0126
Phage integrase family protein; Belongs to the 'phage' integrase family.
  
   
 0.512
topA
DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]
 
   
 0.496
OSCT_2951
Hypothetical protein.
       0.496
OSCT_2786
Polypeptide-transport-associated domain-containing protein; Essential cell division protein.
   
 
 0.477
OSCT_1865
Integrase family protein; Belongs to the 'phage' integrase family.
  
   
 0.468
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.