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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_3047VanW family protein. (520 aa)    
Predicted Functional Partners:
OSCT_2290
Transcription attenuator LytR.
 
     0.706
OSCT_0814
Cell envelope-related transcriptional attenuator.
  
     0.690
OSCT_0674
Transcription attenuator LytR.
 
     0.665
OSCT_1419
Cell envelope-related transcriptional attenuator.
  
     0.665
OSCT_1541
PT repeat-containing protein.
  
     0.605
OSCT_2371
Hypothetical protein.
 
     0.556
OSCT_0681
Peptidase C60 sortase A and B.
  
     0.513
OSCT_0439
Methicillin resistance protein.
  
     0.481
OSCT_3048
Serine/threonine protein kinase.
       0.471
OSCT_3049
Hypothetical protein.
       0.471
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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