STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_3098Glycosyl transferase group 1. (373 aa)    
Predicted Functional Partners:
OSCT_1262
Glycosyl transferase, group 1.
  
     0.746
OSCT_0476
O-antigen polymerase.
  
 
  0.738
OSCT_0429
Polysaccharide biosynthesis protein.
  
    0.732
OSCT_1276
Glycosyl transferase, group 1.
  
     0.705
OSCT_2824
Glycosyl transferase group 1.
 
     0.703
OSCT_1533
O-antigen polymerase.
  
 
  0.677
serC
Phosphoserine aminotransferase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily.
       0.639
OSCT_2839
Glycosyl transferase group 1.
  
     0.624
OSCT_1385
Glycosyl transferase family 2.
 
 
    0.622
OSCT_0486
O-antigen polymerase.
  
 
  0.602
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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