Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_3118Hypothetical protein. (342 aa)    
Predicted Functional Partners:
OSCT_3120
Alpha/beta hydrolase fold protein.
       0.710
OSCT_3119
methylated-DNA--protein-cysteine methyltransferase.
       0.709
OSCT_0440
LmbE family protein.
 
  
 0.689
OSCT_0017
Serine acetyltransferase.
  
  
 0.649
OSCT_0967
Serine O-acetyltransferase.
  
  
 0.649
OSCT_0989
LmbE family protein.
 
  
 0.625
pheT
phenylalanyl-tRNA synthetase, beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
  
  
 0.604
OSCT_0897
DNA binding domain protein, excisionase family.
  
     0.593
OSCT_1747
Hypothetical protein.
  
    0.593
guaA
Bifunctional GMP synthase/glutamine amidotransferase protein; Catalyzes the synthesis of GMP from XMP.
  
  
 0.569
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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