STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_3125Protein of unknown function UPF0052 and CofD. (394 aa)    
Predicted Functional Partners:
OSCT_3124
Hypothetical protein.
     
 0.795
OSCT_3126
Phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II.
 
     0.776
OSCT_3127
Phosphomannomutase.
       0.743
OSCT_3122
Hypothetical protein.
  
    0.645
selA
Selenocysteine synthase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis.
       0.636
OSCT_1313
F420-dependent oxidoreductase.
  
 
 0.577
OSCT_2290
Transcription attenuator LytR.
  
     0.528
OSCT_3128
Methylenetetrahydrofolate reductase; Belongs to the methylenetetrahydrofolate reductase family.
       0.487
OSCT_3129
SMC domain-containing protein.
       0.487
OSCT_1818
Hypothetical protein.
  
    0.468
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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