STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_3133YD repeat-containing protein. (224 aa)    
Predicted Functional Partners:
OSCT_0997
Hypothetical protein.
  
     0.593
OSCT_2328
TPR repeat-containing protein.
  
    0.540
OSCT_1540
Hypothetical protein.
  
     0.506
OSCT_0022
YD repeat-containing protein.
  
     0.503
OSCT_0024
Hypothetical protein.
  
 
 0.481
OSCT_2698
Na-Ca exchanger/integrin-beta4.
  
 
 0.481
OSCT_3142
YD repeat protein.
 
     0.459
OSCT_2613
Hypothetical protein.
  
 
 0.448
OSCT_1726
Hypothetical protein.
  
    0.447
OSCT_3134
Hypothetical protein.
     
 0.420
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.