Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_3170NB-ARC domain-containing protein. (1172 aa)    
Predicted Functional Partners:
OSCT_1227
PAS sensor protein.
   
 0.821
OSCT_1139
WD-40 repeat-containing protein.
 
 0.778
OSCT_2085
Adenylate/guanylate cyclase.
 
 
  0.756
OSCT_2800
NB-ARC domain-containing protein.
  
     0.756
OSCT_2221
Multi-sensor hybrid histidine kinase.
    
 0.754
OSCT_1310
PAS fold family protein.
   
 0.744
OSCT_0739
Sensory box histidine kinase/response regulator.
   
 0.733
OSCT_1208
WD-40 repeat protein.
  
 
  0.732
OSCT_1374
WD-40 repeat-containing protein.
  
 
  0.728
OSCT_0021
WD-40 repeat protein.
  
 
  0.716
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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