Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
OSCT_3171Helix-turn-helix domain protein. (393 aa)    
Predicted Functional Partners:
OSCT_2720
Pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein.
  
 
 0.870
OSCT_3172
PemK-like protein; Toxic component of a type II toxin-antitoxin (TA) system.
     
 0.802
OSCT_2969
Pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein.
  
 
  0.722
OSCT_2673
Helix-turn-helix domain-containing protein.
  
 
 0.691
nadE
NAD synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
    
 0.675
OSCT_2820
Tetratricopeptide TPR_2 repeat protein.
    
  0.590
OSCT_2329
Plasmid maintenance system antidote protein, XRE family.
 
  
 0.537
OSCT_2995
Cupin 2 domain-containing protein.
  
 
 0.515
OSCT_3108
Hypothetical protein.
  
     0.491
OSCT_0984
Hypothetical protein.
  
     0.481
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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