STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_3173Protein of unknown function DUF404. (489 aa)    
Predicted Functional Partners:
OSCT_3174
Hypothetical protein.
  
 0.997
OSCT_3175
Transglutaminase domain-containing protein.
 
  
 0.939
pepA
Leucyl aminopeptidase; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides.
    
  0.496
OSCT_3171
Helix-turn-helix domain protein.
 
     0.474
OSCT_0799
Gamma-glutamyltransferase.
    
  0.448
OSCT_0145
Glu/Leu/Phe/Val dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
   
 
  0.428
OSCT_1140
aromatic-L-amino-acid decarboxylase.
    
  0.425
OSCT_0525
Aminotransferase class I and II.
    
  0.409
OSCT_3029
Peptidase M1 membrane alanine aminopeptidase.
    
  0.407
OSCT_3172
PemK-like protein; Toxic component of a type II toxin-antitoxin (TA) system.
       0.404
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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