Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_3185WD40 repeat, subgroup. (1180 aa)    
Predicted Functional Partners:
OSCT_3186
Hypothetical protein.
 
     0.917
OSCT_0392
Immunoglobulin I-set domain protein.
  
  0.794
OSCT_1905
Tetratricopeptide TPR_2 repeat protein.
  
 
  0.713
OSCT_3170
NB-ARC domain-containing protein.
  
 
  0.693
OSCT_0061
Hypothetical protein.
  
     0.682
OSCT_2022
SNF2-related helicase.
   
 0.665
OSCT_1950
TPR repeat-containing protein.
  
 
  0.662
OSCT_1775
TPR domain protein.
  
 
  0.641
OSCT_1984
TPR repeat-containing protein.
  
 
  0.621
OSCT_2800
NB-ARC domain-containing protein.
  
 
  0.610
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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