STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_3187VanW family protein. (465 aa)    
Predicted Functional Partners:
OSCT_3188
Mannose-6-phosphate isomerase.
       0.682
OSCT_3189
Hypothetical protein; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit.
       0.682
OSCT_0814
Cell envelope-related transcriptional attenuator.
 
     0.596
OSCT_1541
PT repeat-containing protein.
  
     0.572
OSCT_2290
Transcription attenuator LytR.
 
     0.567
OSCT_0674
Transcription attenuator LytR.
 
     0.529
OSCT_3144
Dynamin family protein.
  
     0.488
OSCT_0681
Peptidase C60 sortase A and B.
  
     0.484
OSCT_2371
Hypothetical protein.
 
     0.482
OSCT_0673
Stage II sporulation E family protein.
  
     0.474
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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