Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_3223Hypothetical protein. (844 aa)    
Predicted Functional Partners:
OSCT_2775
Peptidoglycan glycosyltransferase.
 
 
 0.758
OSCT_0250
Peptidoglycan glycosyltransferase.
 
 
 0.749
OSCT_2780
Cell division protein FtsW; Belongs to the SEDS family.
  
 
 
 0.683
OSCT_2805
Cell cycle protein; Belongs to the SEDS family.
  
 
 
 0.683
OSCT_0771
Peptidoglycan glycosyltransferase.
 
 
 0.652
OSCT_1024
Peptidase M23B.
  
     0.630
OSCT_2019
Helicase.
   
 
 0.603
OSCT_1803
Signal peptidase I; Belongs to the peptidase S26 family.
  
     0.599
OSCT_2189
Lytic transglycosylase catalytic.
 
   
 0.577
murC
UDP-N-acetylmuramate/alanine ligase; Cell wall formation; Belongs to the MurCDEF family.
 
   
 0.572
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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