STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_3227Hypothetical protein. (200 aa)    
Predicted Functional Partners:
OSCT_3226
Hypothetical protein.
 
     0.956
OSCT_0600
Hypothetical protein.
 
     0.814
OSCT_3129
SMC domain-containing protein.
 
     0.798
sbcD
Nuclease SbcCD, D subunit; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.
 
     0.792
OSCT_0441
HEAT repeat-containing PBS lyase.
  
     0.700
OSCT_0971
Hypothetical protein.
  
     0.623
OSCT_1769
Hypothetical protein.
  
     0.595
OSCT_1533
O-antigen polymerase.
  
     0.566
OSCT_0970
Hypothetical protein.
  
     0.560
OSCT_3225
FolC bifunctional protein; Belongs to the folylpolyglutamate synthase family.
       0.535
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.