Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ADV11961.1KEGG: bmt:BSUIS_A1240 TRAP transporter, 4TM/12TM fusion protein; TIGRFAM: TRAP transporter, 4TM/12TM fusion protein; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit. (685 aa)    
Predicted Functional Partners:
ADV11960.1
TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: oan:Oant_2429 TRAP transporter solute receptor TAXI family protein.
 
  
 0.940
ADV09946.1
TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: mes:Meso_4067 TRAP transporter solute receptor TAXI family protein.
 
  
 0.855
ADV10348.1
PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: smd:Smed_4747 tripartite ATP-independent periplasmic transporter DctQ.
  
   
 0.565
ADV10347.1
TRAP dicarboxylate transporter, DctP subunit; KEGG: sme:SM_b21353 putative periplasmic C4-dicarboxylate transport protein; TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: Extracellular solute-binding protein, family 7.
  
   
 0.561
ADV09948.1
PFAM: Domain of unknown function DUF1850; KEGG: oan:Oant_4099 hypothetical protein.
 
    0.479
ADV10916.1
PFAM: protein of unknown function DUF112 transmembrane; KEGG: oan:Oant_3421 hypothetical protein.
  
   
 0.412
Your Current Organism:
Mesorhizobium ciceri biovar
NCBI taxonomy Id: 765698
Other names: M. ciceri biovar biserrulae WSM1271, Mesorhizobium ciceri biovar biserrulae WSM1271, Mesorhizobium ciceri biovar biserrulae str. WSM1271, Mesorhizobium ciceri biovar biserrulae strain WSM1271, Mesorhizobium ciceri bv. biserrulae WSM1271
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