STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDW01688.1Transcriptional regulator /transcriptional regulator, LysR family. (294 aa)    
Predicted Functional Partners:
SDW01526.1
Formate dehydrogenase delta subunit.
 
     0.872
SDW01593.1
Formate dehydrogenase alpha subunit.
 
     0.774
SDW01563.1
FdhD protein.
 
     0.750
SDW01654.1
Formate dehydrogenase gamma subunit.
 
     0.679
SDW01622.1
Formate dehydrogenase beta subunit.
 
     0.642
SDW83054.1
Transcriptional regulator, LysR family.
  
     0.557
SDX84342.1
DNA-binding transcriptional regulator, LysR family.
  
     0.468
Your Current Organism:
Acidimangrovimonas indica
NCBI taxonomy Id: 765699
Other names: A. indica, Acidimangrovimonas indica (Jiang et al. 2014) Ren et al. 2019, CGMCC 1.10859, DSM 24802, Defluviimonas indica, Defluviimonas indica Jiang et al. 2014, JCM 17871, MCCC 1A01802, Rhodobacter sp. 20V17, strain 20V17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.