STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDW19140.1Hypothetical protein. (219 aa)    
Predicted Functional Partners:
SDW02968.1
tryptophanyl-tRNA synthetase.
  
    0.858
SDW19181.1
Hypothetical protein.
       0.841
SDW19216.1
Putative hydrolases of HD superfamily.
       0.812
SDW19041.1
Iron-regulated ABC transporter membrane component SufB.
     
 0.710
SDW38101.1
Beta-barrel assembly machine subunit BamD.
 
     0.700
SDW19102.1
Transcriptional regulator, BadM/Rrf2 family.
       0.667
SDX24455.1
Hypothetical protein.
  
     0.614
SDW18979.1
Fe-S cluster assembly ATP-binding protein.
     
 0.612
SDW18930.1
Fe-S cluster assembly protein SufD.
     
 0.608
SDW19070.1
Cysteine desulfurase.
       0.599
Your Current Organism:
Acidimangrovimonas indica
NCBI taxonomy Id: 765699
Other names: A. indica, Acidimangrovimonas indica (Jiang et al. 2014) Ren et al. 2019, CGMCC 1.10859, DSM 24802, Defluviimonas indica, Defluviimonas indica Jiang et al. 2014, JCM 17871, MCCC 1A01802, Rhodobacter sp. 20V17, strain 20V17
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