STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDW42742.1OmpA family protein. (211 aa)    
Predicted Functional Partners:
SDX47537.1
TolB protein.
  
 0.932
SDW43265.1
Opacity protein.
   
 0.919
SDW04580.1
Porin.
   
 0.903
SDW43017.1
Hint domain-containing protein.
  
 
  0.890
SDX18915.1
Polysaccharide export outer membrane protein.
  
  0.886
SDW20754.1
Hint domain-containing protein.
  
 
  0.869
SDX12608.1
Sporulation related domain-containing protein.
  
  
  0.860
SDW39743.1
Chemotaxis protein MotB.
  
 0.856
SDX97430.1
Polysaccharide export outer membrane protein.
  
  0.854
SDX20138.1
Hypothetical protein.
    
 0.852
Your Current Organism:
Acidimangrovimonas indica
NCBI taxonomy Id: 765699
Other names: A. indica, Acidimangrovimonas indica (Jiang et al. 2014) Ren et al. 2019, CGMCC 1.10859, DSM 24802, Defluviimonas indica, Defluviimonas indica Jiang et al. 2014, JCM 17871, MCCC 1A01802, Rhodobacter sp. 20V17, strain 20V17
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