STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDW47302.1Ribosome maturation factor RimP. (202 aa)    
Predicted Functional Partners:
SDX54811.1
SSU ribosomal protein S12P.
   
   0.995
SDX80348.1
SSU ribosomal protein S10P.
   
 
 0.991
SDW47332.1
NusA antitermination factor.
 
    0.990
SDW47363.1
Hypothetical protein.
  
  
 0.988
SDX49953.1
Small subunit ribosomal protein S2.
  
   0.988
SDX74891.1
SSU ribosomal protein S16P.
   
   0.987
SDX54836.1
SSU ribosomal protein S7P.
   
 
 0.985
SDW47394.1
Bacterial translation initiation factor 2 (bIF-2).
 
  
 0.983
SDW64376.1
SSU ribosomal protein S6P.
  
 
 0.982
SDX79703.1
SSU ribosomal protein S13P.
   
 
 0.972
Your Current Organism:
Acidimangrovimonas indica
NCBI taxonomy Id: 765699
Other names: A. indica, Acidimangrovimonas indica (Jiang et al. 2014) Ren et al. 2019, CGMCC 1.10859, DSM 24802, Defluviimonas indica, Defluviimonas indica Jiang et al. 2014, JCM 17871, MCCC 1A01802, Rhodobacter sp. 20V17, strain 20V17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.