STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDW47026.1DNA replication and repair protein RecF. (369 aa)    
Predicted Functional Partners:
SDW47064.1
DNA polymerase III, beta subunit.
 
  
 0.985
SDW46931.1
DNA gyrase subunit B.
 
  
 0.962
SDW47097.1
Chromosomal replication initiator protein DnaA.
 
  
 0.960
SDX03453.1
dnaA protein.
 
  
 0.932
SDX64480.1
DNA topoisomerase IV subunit B.
 
  
 0.894
SDW46991.1
Hypothetical protein.
       0.841
SDW48423.1
DNA replication and repair protein RecO.
  
 
 
 0.840
SDX25919.1
DNA replication and repair protein RecR.
 
  
 0.761
SDX65489.1
Ribosome-binding factor A.
  
    0.758
SDW95623.1
Ribonuclease D.
 
     0.712
Your Current Organism:
Acidimangrovimonas indica
NCBI taxonomy Id: 765699
Other names: A. indica, Acidimangrovimonas indica (Jiang et al. 2014) Ren et al. 2019, CGMCC 1.10859, DSM 24802, Defluviimonas indica, Defluviimonas indica Jiang et al. 2014, JCM 17871, MCCC 1A01802, Rhodobacter sp. 20V17, strain 20V17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.