STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDW59347.1Cytidine deaminase. (152 aa)    
Predicted Functional Partners:
SDX07673.1
phosphoribosyl-ATP pyrophosphatase.
   
    0.897
SDX86727.1
3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II.
    
 0.881
SDX47439.1
tRNA(Ile)-lysidine synthase.
 
 0.879
SDX11449.1
Zn-dependent alcohol dehydrogenase.
  
 
  0.856
SDX85726.1
S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase.
  
 
  0.856
SDW60910.1
Hypoxanthine phosphoribosyltransferase.
    
 0.834
SDX11746.1
Cytosine deaminase.
    
 0.833
SDX12642.1
Uracil phosphoribosyltransferase.
   
 0.825
SDX77750.1
Xanthine dehydrogenase, molybdenum binding subunit apoprotein.
    
  0.796
SDW87112.1
BirA family transcriptional regulator, biotin operon repressor / biotin-[acetyl-CoA-carboxylase] ligase.
  
    0.788
Your Current Organism:
Acidimangrovimonas indica
NCBI taxonomy Id: 765699
Other names: A. indica, Acidimangrovimonas indica (Jiang et al. 2014) Ren et al. 2019, CGMCC 1.10859, DSM 24802, Defluviimonas indica, Defluviimonas indica Jiang et al. 2014, JCM 17871, MCCC 1A01802, Rhodobacter sp. 20V17, strain 20V17
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