STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDW73852.1CRISPR-associated protein, Cas1 family. (304 aa)    
Predicted Functional Partners:
SDW73820.1
CRISPR-associated protein, Cas2 family.
 
 
 0.999
SDW73882.1
CRISPR-associated endonuclease, Csn1 family.
 
   
 0.943
SDW06427.1
DNA-binding protein HU-beta.
    
   0.721
SDW42194.1
Integration host factor subunit beta.
    
   0.721
SDW58408.1
Integration host factor subunit alpha.
    
   0.721
SDX16764.1
DNA-binding protein.
    
   0.721
SDW10036.1
Predicted dehydrogenase.
   
 
 0.407
SDW31378.1
Predicted dehydrogenase.
   
 
 0.407
SDX17675.1
Predicted dehydrogenase.
   
 
 0.407
SDX57247.1
Predicted dehydrogenase.
   
 
 0.407
Your Current Organism:
Acidimangrovimonas indica
NCBI taxonomy Id: 765699
Other names: A. indica, Acidimangrovimonas indica (Jiang et al. 2014) Ren et al. 2019, CGMCC 1.10859, DSM 24802, Defluviimonas indica, Defluviimonas indica Jiang et al. 2014, JCM 17871, MCCC 1A01802, Rhodobacter sp. 20V17, strain 20V17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.