STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDX11417.1MFS transporter, DHA1 family, tetracycline resistance protein. (403 aa)    
Predicted Functional Partners:
SDW49106.1
Ferrochelatase.
 
      0.723
SDX11449.1
Zn-dependent alcohol dehydrogenase.
       0.682
SDX11382.1
3-carboxy-cis,cis-muconate cycloisomerase.
       0.618
SDX11481.1
L-alanine-DL-glutamate epimerase.
       0.595
SDX11207.1
3-oxoadipate enol-lactonase.
       0.509
SDW00362.1
HlyD family secretion protein.
   
  0.495
SDW11571.1
HlyD family secretion protein.
   
  0.495
SDW23169.1
HlyD family secretion protein.
   
  0.495
SDW26917.1
Multidrug resistance efflux pump.
   
  0.495
SDW69981.1
Membrane fusion protein, multidrug efflux system.
   
  0.495
Your Current Organism:
Acidimangrovimonas indica
NCBI taxonomy Id: 765699
Other names: A. indica, Acidimangrovimonas indica (Jiang et al. 2014) Ren et al. 2019, CGMCC 1.10859, DSM 24802, Defluviimonas indica, Defluviimonas indica Jiang et al. 2014, JCM 17871, MCCC 1A01802, Rhodobacter sp. 20V17, strain 20V17
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