STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDX25125.1Protein translocase subunit secF. (324 aa)    
Predicted Functional Partners:
SDX25155.1
Preprotein translocase subunit SecD.
0.999
SDX79758.1
Protein translocase subunit secY/sec61 alpha.
  
 
 0.989
SDW35601.1
Protein translocase subunit yidC.
  
 0.987
SDX25187.1
Protein translocase subunit yajC.
 
 
 0.977
SDW41201.1
Protein translocase subunit secG.
   
 0.975
SDX54466.1
Protein translocase subunit secE/sec61 gamma.
   
 0.972
SDW47564.1
Protein translocase subunit secA.
 
 
 0.845
SDX25066.1
Uncharacterized conserved protein, contains Mth938-like domain.
       0.841
SDX25096.1
Hypothetical protein.
       0.841
SDX25004.1
Heme exporter protein B.
       0.720
Your Current Organism:
Acidimangrovimonas indica
NCBI taxonomy Id: 765699
Other names: A. indica, Acidimangrovimonas indica (Jiang et al. 2014) Ren et al. 2019, CGMCC 1.10859, DSM 24802, Defluviimonas indica, Defluviimonas indica Jiang et al. 2014, JCM 17871, MCCC 1A01802, Rhodobacter sp. 20V17, strain 20V17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.