SDX30278.1 protein (Acidimangrovimonas indica)

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second shell of interactors

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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Score

SDX30278.1

Mannosyl-3-phosphoglycerate phosphatase. (254 aa)

Predicted Functional Partners:

SDX30251.1

0.955

SDX30305.1

0.955

SDW28975.1

0.697

SDX24860.1

0.679

SDX11514.1

0.527

SDX30199.1

0.466

SDX30225.1

0.466

SDW02200.1

0.457

SDW51621.1

0.457

SDX04519.1

0.411

Your Current Organism:

Acidimangrovimonas indica

NCBI taxonomy Id: 765699
Other names: A. indica, Acidimangrovimonas indica (Jiang et al. 2014) Ren et al. 2019, CGMCC 1.10859, DSM 24802, Defluviimonas indica, Defluviimonas indica Jiang et al. 2014, JCM 17871, MCCC 1A01802, Rhodobacter sp. 20V17, strain 20V17

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SDW02200.1	SDX30251.1	SAMN05444006_10175	SAMN05444006_11379	Hypothetical protein.	Sucrose phosphorylase.	0.465
SDW02200.1	SDX30278.1	SAMN05444006_10175	SAMN05444006_11380	Hypothetical protein.	Mannosyl-3-phosphoglycerate phosphatase.	0.457
SDW28975.1	SDX30251.1	SAMN05444006_102255	SAMN05444006_11379	Metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family.	Sucrose phosphorylase.	0.503
SDW28975.1	SDX30278.1	SAMN05444006_102255	SAMN05444006_11380	Metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family.	Mannosyl-3-phosphoglycerate phosphatase.	0.697
SDW51621.1	SDX30251.1	SAMN05444006_104136	SAMN05444006_11379	Endonuclease/Exonuclease/phosphatase family protein.	Sucrose phosphorylase.	0.465
SDW51621.1	SDX30278.1	SAMN05444006_104136	SAMN05444006_11380	Endonuclease/Exonuclease/phosphatase family protein.	Mannosyl-3-phosphoglycerate phosphatase.	0.457
SDX04519.1	SDX30278.1	SAMN05444006_10978	SAMN05444006_11380	Alpha/beta hydrolase of unknown function.	Mannosyl-3-phosphoglycerate phosphatase.	0.411
SDX11514.1	SDX30278.1	SAMN05444006_11053	SAMN05444006_11380	Mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase.	Mannosyl-3-phosphoglycerate phosphatase.	0.527
SDX24860.1	SDX30278.1	SAMN05444006_11298	SAMN05444006_11380	Hydroxypyruvate reductase.	Mannosyl-3-phosphoglycerate phosphatase.	0.679
SDX30199.1	SDX30225.1	SAMN05444006_11377	SAMN05444006_11378	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contain LysM domain.	Protein CcmA, bactofilin family.	0.882
SDX30199.1	SDX30251.1	SAMN05444006_11377	SAMN05444006_11379	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contain LysM domain.	Sucrose phosphorylase.	0.479
SDX30199.1	SDX30278.1	SAMN05444006_11377	SAMN05444006_11380	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contain LysM domain.	Mannosyl-3-phosphoglycerate phosphatase.	0.466
SDX30199.1	SDX30305.1	SAMN05444006_11377	SAMN05444006_11381	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contain LysM domain.	Glucosyl-3-phosphoglycerate synthase.	0.535
SDX30225.1	SDX30199.1	SAMN05444006_11378	SAMN05444006_11377	Protein CcmA, bactofilin family.	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contain LysM domain.	0.882
SDX30225.1	SDX30251.1	SAMN05444006_11378	SAMN05444006_11379	Protein CcmA, bactofilin family.	Sucrose phosphorylase.	0.466
SDX30225.1	SDX30278.1	SAMN05444006_11378	SAMN05444006_11380	Protein CcmA, bactofilin family.	Mannosyl-3-phosphoglycerate phosphatase.	0.466
SDX30225.1	SDX30305.1	SAMN05444006_11378	SAMN05444006_11381	Protein CcmA, bactofilin family.	Glucosyl-3-phosphoglycerate synthase.	0.529
SDX30251.1	SDW02200.1	SAMN05444006_11379	SAMN05444006_10175	Sucrose phosphorylase.	Hypothetical protein.	0.465
SDX30251.1	SDW28975.1	SAMN05444006_11379	SAMN05444006_102255	Sucrose phosphorylase.	Metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family.	0.503
SDX30251.1	SDW51621.1	SAMN05444006_11379	SAMN05444006_104136	Sucrose phosphorylase.	Endonuclease/Exonuclease/phosphatase family protein.	0.465

page 1 of 2

Network Stats

number of nodes:

11

number of edges:

49

average node degree:

8.91

avg. local clustering coefficient:

0.915

expected number of edges:

32

PPI enrichment p-value:

0.00331

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0006281

DNA repair

7 of 68

1.75

3.08

7.38e-09

GO:0006259

DNA metabolic process

9 of 215

1.36

2.1

7.38e-09

GO:0009432

SOS response

3 of 15

2.04

1.81

0.00025

GO:0006310

DNA recombination

4 of 71

1.49

1.39

0.00042

GO:0019363

Pyridine nucleotide biosynthetic process

2 of 8

2.14

1.17

0.0062

(more ...)

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0003684

Damaged DNA binding

3 of 9

2.26

1.9

0.00024

GO:0140097

Catalytic activity, acting on DNA

6 of 104

1.5

1.84

9.90e-06

GO:0140640

Catalytic activity, acting on a nucleic acid

7 of 239

1.2

1.34

1.78e-05

GO:0140664

ATP-dependent DNA damage sensor activity

2 of 6

2.26

1.26

0.0045

GO:0008094

ATP-dependent activity, acting on DNA

3 of 32

1.71

1.24

0.0026

(more ...)

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:1632

DNA repair, and DNA damage sensor activity

8 of 29

2.18

5.57

1.79e-13

CL:1634

Mixed, incl. DNA damage sensor activity, and RecQ zinc-binding

3 of 16

2.01

1.41

0.0018

CL:1652

Mixed, incl. RecQ zinc-binding, and UvrD/REP helicase N-terminal domain

2 of 7

2.19

0.8

0.0332

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map03440

Homologous recombination

4 of 40

1.74

1.8

9.99e-05

map03420

Nucleotide excision repair

3 of 26

1.8

1.45

0.0010

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0234

DNA repair

6 of 26

2.1

4.03

1.32e-09

KW-0742

SOS response

3 of 6

2.44

2.42

2.68e-05

KW-0235

DNA replication

2 of 13

1.92

1.01

0.0111

KW-0238

DNA-binding

5 of 199

1.14

0.99

0.00088

KW-0378

Hydrolase

5 of 269

1.01

0.78

0.0029

(more ...)

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