STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDX33478.1L-alanine-DL-glutamate epimerase. (366 aa)    
Predicted Functional Partners:
SDX33512.1
Pyruvate dehydrogenase (quinone).
     0.948
SDX33304.1
Short-chain dehydrogenase.
 
  
  0.778
SDX33340.1
Choline dehydrogenase.
 
  
  0.720
SDX93940.1
Pyruvate dehydrogenase (quinone).
     0.702
SDX70699.1
Altronate hydrolase/galactarate dehydratase.
 
  
 0.679
SDX33375.1
Gluconate 2-dehydrogenase subunit 3.
 
     0.668
SDX73942.1
4-hydroxy-2-oxoheptanedioate aldolase.
 
 
 0.621
SDX33269.1
Glucoamylase (glucan-1,4-alpha-glucosidase), GH15 family.
 
     0.604
SDW01319.1
L-lactate dehydrogenase (cytochrome).
    
 0.597
SDX81589.1
Predicted metal-dependent hydrolase, TIM-barrel fold.
 
  
 0.595
Your Current Organism:
Acidimangrovimonas indica
NCBI taxonomy Id: 765699
Other names: A. indica, Acidimangrovimonas indica (Jiang et al. 2014) Ren et al. 2019, CGMCC 1.10859, DSM 24802, Defluviimonas indica, Defluviimonas indica Jiang et al. 2014, JCM 17871, MCCC 1A01802, Rhodobacter sp. 20V17, strain 20V17
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