STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDX47439.1tRNA(Ile)-lysidine synthase. (427 aa)    
Predicted Functional Partners:
SDX67009.1
Sulfur carrier protein.
  
   0.946
SDW60910.1
Hypoxanthine phosphoribosyltransferase.
 
 
 0.910
SDW08590.1
Ubiquinol-cytochrome c reductase cytochrome c1 subunit.
  
  
  0.890
SDW59347.1
Cytidine deaminase.
 
 0.879
SDW08681.1
Ubiquinol-cytochrome c reductase iron-sulfur subunit.
    
  0.861
SDX88114.1
Ubiquinol-cytochrome c reductase iron-sulfur subunit.
    
  0.861
SDW47984.1
Glutamate synthase (NADPH) large subunit.
    
  0.860
SDX03762.1
peptidyl-tRNA hydrolase.
  
  
 0.855
SDX47508.1
Peptidoglycan-associated lipoprotein.
   
   0.849
SDX47468.1
Tol-pal system protein YbgF.
       0.841
Your Current Organism:
Acidimangrovimonas indica
NCBI taxonomy Id: 765699
Other names: A. indica, Acidimangrovimonas indica (Jiang et al. 2014) Ren et al. 2019, CGMCC 1.10859, DSM 24802, Defluviimonas indica, Defluviimonas indica Jiang et al. 2014, JCM 17871, MCCC 1A01802, Rhodobacter sp. 20V17, strain 20V17
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