STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDX50907.1Cold-shock DNA-binding protein family. (178 aa)    
Predicted Functional Partners:
SDX52817.1
ATP-dependent helicase HrpB.
    
  0.929
SDX65728.1
Polyribonucleotide nucleotidyltransferase.
  
 
 0.895
SDX48092.1
RNAse R.
    
 0.893
SDW51127.1
RNAse PH.
     
 0.867
SDW75637.1
AAA domain-containing protein.
    
  0.860
SDX50874.1
Hypothetical protein.
  
    0.849
SDW87224.1
Superfamily II DNA and RNA helicase.
   
 0.841
SDX23317.1
ATP-dependent RNA helicase DeaD.
   
 0.841
SDX47910.1
ATP-dependent RNA helicase RhlE.
   
 0.841
SDX03323.1
Endonuclease/Exonuclease/phosphatase family protein.
  
  0.840
Your Current Organism:
Acidimangrovimonas indica
NCBI taxonomy Id: 765699
Other names: A. indica, Acidimangrovimonas indica (Jiang et al. 2014) Ren et al. 2019, CGMCC 1.10859, DSM 24802, Defluviimonas indica, Defluviimonas indica Jiang et al. 2014, JCM 17871, MCCC 1A01802, Rhodobacter sp. 20V17, strain 20V17
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