STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDX57106.1Transcriptional antiterminator RfaH. (87 aa)    
Predicted Functional Partners:
SDX54698.1
DNA-directed RNA polymerase subunit beta'.
  
 0.999
SDX54667.1
DNA-directed RNA polymerase subunit beta.
  
 0.997
SDW47332.1
NusA antitermination factor.
  
 0.993
SDX80348.1
SSU ribosomal protein S10P.
  
 0.993
SDX79659.1
DNA-directed RNA polymerase subunit alpha.
  
 0.992
SDX80141.1
SSU ribosomal protein S3P.
  
 
 0.989
SDX79943.1
SSU ribosomal protein S8P.
  
 
 0.976
SDX54536.1
LSU ribosomal protein L11P.
  
 
 0.975
SDX54635.1
LSU ribosomal protein L12P.
  
 
 0.975
SDX54836.1
SSU ribosomal protein S7P.
  
 
 0.975
Your Current Organism:
Acidimangrovimonas indica
NCBI taxonomy Id: 765699
Other names: A. indica, Acidimangrovimonas indica (Jiang et al. 2014) Ren et al. 2019, CGMCC 1.10859, DSM 24802, Defluviimonas indica, Defluviimonas indica Jiang et al. 2014, JCM 17871, MCCC 1A01802, Rhodobacter sp. 20V17, strain 20V17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.