STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDX63029.1Lipopolysaccharide export system permease protein. (379 aa)    
Predicted Functional Partners:
SDX63070.1
Lipopolysaccharide export system permease protein.
 
 0.999
SDW95462.1
Lipopolysaccharide export system ATP-binding protein.
 
 
 0.998
SDX63111.1
LPS-assembly protein.
 
 
 0.982
SDW70822.1
phospholipid/cholesterol/gamma-HCH transport system permease protein.
     
 0.928
SDX43924.1
Zinc transport system permease protein.
     
 0.924
SDW98435.1
Capsular polysaccharide transport system permease protein.
    
  0.912
SDX36628.1
Polar amino acid transport system permease protein.
   
 
  0.900
SDX36657.1
Amino acid ABC transporter membrane protein 2, PAAT family.
   
 
  0.900
SDX40270.1
ATP-binding cassette, subfamily B/ATP-binding cassette, subfamily B, MsbA.
 
  
  0.892
SDW88288.1
Molybdate transport system substrate-binding protein.
     
 0.876
Your Current Organism:
Acidimangrovimonas indica
NCBI taxonomy Id: 765699
Other names: A. indica, Acidimangrovimonas indica (Jiang et al. 2014) Ren et al. 2019, CGMCC 1.10859, DSM 24802, Defluviimonas indica, Defluviimonas indica Jiang et al. 2014, JCM 17871, MCCC 1A01802, Rhodobacter sp. 20V17, strain 20V17
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