A0A178DEV9 protein (Pyrenochaeta sp. DS3sAY3a)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

A0A178DEV9

HlyIII-domain-containing protein. (298 aa)

Predicted Functional Partners:

A0A178ECB8

0.849

A0A178EBQ8

0.661

A0A178EHP5

0.661

A0A178E0N9

0.506

A0A178DI38

0.502

A0A178EK59

0.493

A0A178DW41

0.473

A0A178EFM0

0.473

A0A178DVS9

0.472

A0A178EK12

0.472

Your Current Organism:

Pyrenochaeta sp. DS3sAY3a

NCBI taxonomy Id: 765867
Other names: P. sp. DS3sAY3a

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A178DEV9	A0A178DI38	HlyIII-domain-containing protein.	GTP cyclohydrolase I.	0.502
A0A178DEV9	A0A178DVS9	HlyIII-domain-containing protein.	MFS general substrate transporter.	0.472
A0A178DEV9	A0A178DW41	HlyIII-domain-containing protein.	Acyl-CoA desaturase; Stearyl-CoA desaturase that utilizes O(2) and electrons from reduced cytochrome b5 to introduce the first double bond into saturated fatty acyl-CoA substrates.	0.473
A0A178DEV9	A0A178E0N9	HlyIII-domain-containing protein.	BHLH domain-containing protein.	0.506
A0A178DEV9	A0A178EBQ8	HlyIII-domain-containing protein.	ArfGap-domain-containing protein.	0.661
A0A178DEV9	A0A178ECB8	HlyIII-domain-containing protein.	HlyIII-domain-containing protein.	0.849
A0A178DEV9	A0A178EFM0	HlyIII-domain-containing protein.	Acyl-CoA desaturase; Stearyl-CoA desaturase that utilizes O(2) and electrons from reduced cytochrome b5 to introduce the first double bond into saturated fatty acyl-CoA substrates.	0.473
A0A178DEV9	A0A178EHP5	HlyIII-domain-containing protein.	Uncharacterized protein.	0.661
A0A178DEV9	A0A178EK12	HlyIII-domain-containing protein.	Thioesterase/thiol ester dehydrase-isomerase.	0.472
A0A178DEV9	A0A178EK59	HlyIII-domain-containing protein.	Mitochondrial carrier; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.493
A0A178DI38	A0A178DEV9	GTP cyclohydrolase I.	HlyIII-domain-containing protein.	0.502
A0A178DI38	A0A178ECB8	GTP cyclohydrolase I.	HlyIII-domain-containing protein.	0.749
A0A178DVS9	A0A178DEV9	MFS general substrate transporter.	HlyIII-domain-containing protein.	0.472
A0A178DW41	A0A178DEV9	Acyl-CoA desaturase; Stearyl-CoA desaturase that utilizes O(2) and electrons from reduced cytochrome b5 to introduce the first double bond into saturated fatty acyl-CoA substrates.	HlyIII-domain-containing protein.	0.473
A0A178DW41	A0A178E0N9	Acyl-CoA desaturase; Stearyl-CoA desaturase that utilizes O(2) and electrons from reduced cytochrome b5 to introduce the first double bond into saturated fatty acyl-CoA substrates.	BHLH domain-containing protein.	0.545
A0A178DW41	A0A178ECB8	Acyl-CoA desaturase; Stearyl-CoA desaturase that utilizes O(2) and electrons from reduced cytochrome b5 to introduce the first double bond into saturated fatty acyl-CoA substrates.	HlyIII-domain-containing protein.	0.473
A0A178DW41	A0A178EFM0	Acyl-CoA desaturase; Stearyl-CoA desaturase that utilizes O(2) and electrons from reduced cytochrome b5 to introduce the first double bond into saturated fatty acyl-CoA substrates.	Acyl-CoA desaturase; Stearyl-CoA desaturase that utilizes O(2) and electrons from reduced cytochrome b5 to introduce the first double bond into saturated fatty acyl-CoA substrates.	0.946
A0A178DW41	A0A178EK12	Acyl-CoA desaturase; Stearyl-CoA desaturase that utilizes O(2) and electrons from reduced cytochrome b5 to introduce the first double bond into saturated fatty acyl-CoA substrates.	Thioesterase/thiol ester dehydrase-isomerase.	0.442
A0A178E0N9	A0A178DEV9	BHLH domain-containing protein.	HlyIII-domain-containing protein.	0.506
A0A178E0N9	A0A178DW41	BHLH domain-containing protein.	Acyl-CoA desaturase; Stearyl-CoA desaturase that utilizes O(2) and electrons from reduced cytochrome b5 to introduce the first double bond into saturated fatty acyl-CoA substrates.	0.545