STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A178DLJ2Uncharacterized protein. (595 aa)    
Predicted Functional Partners:
A0A178DTU2
L30e-like protein.
   
 0.969
A0A178E6H9
Putative rRNA pseudouridine synthase.
   
 0.945
A0A178DLV0
Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.
   
 0.911
A0A178E343
Uncharacterized protein.
    
 0.844
A0A178E8C6
60S ribosomal protein-like protein L7a.
   
 0.844
A0A178ECU0
40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family.
   
 0.844
A0A178EBC9
Uncharacterized protein.
   
 0.841
A0A178EFN0
H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.
   
 0.841
A0A178EK00
Uncharacterized protein.
   
 0.841
A0A178DU37
Uncharacterized protein.
   
 0.827
Your Current Organism:
Pyrenochaeta sp. DS3sAY3a
NCBI taxonomy Id: 765867
Other names: P. sp. DS3sAY3a
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