A0A178DNX9 protein (Pyrenochaeta sp. DS3sAY3a)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A178DNX9

WD40 repeat-like protein. (392 aa)

Predicted Functional Partners:

A0A178EMJ9

0.621

A0A178DPB1

0.592

A0A178DKP0

0.572

A0A178E3K9

0.572

A0A178EA30

0.555

A0A178EL17

0.493

A0A178DI70

0.451

A0A178DZ30

0.436

A0A178E6B5

0.429

A0A178DHC2

0.418

Your Current Organism:

Pyrenochaeta sp. DS3sAY3a

NCBI taxonomy Id: 765867
Other names: P. sp. DS3sAY3a

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A178DHC2	A0A178DI70	TRASH domain-containing protein.	Utp21-domain-containing protein.	0.804
A0A178DHC2	A0A178DKP0	TRASH domain-containing protein.	Ribosome biogenesis protein-like protein RPF2.	0.994
A0A178DHC2	A0A178DNX9	TRASH domain-containing protein.	WD40 repeat-like protein.	0.418
A0A178DHC2	A0A178DPB1	TRASH domain-containing protein.	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.	0.893
A0A178DHC2	A0A178DZ30	TRASH domain-containing protein.	Bystin-domain-containing protein.	0.884
A0A178DHC2	A0A178E3K9	TRASH domain-containing protein.	Sas10/Utp3 family protein-like protein.	0.848
A0A178DHC2	A0A178E6B5	TRASH domain-containing protein.	Low temperature viability protein.	0.915
A0A178DHC2	A0A178EA30	TRASH domain-containing protein.	NUC153 domain-containing protein.	0.838
A0A178DHC2	A0A178EL17	TRASH domain-containing protein.	CBF-domain-containing protein.	0.707
A0A178DHC2	A0A178EMJ9	TRASH domain-containing protein.	Protein SDA1; Required for 60S pre-ribosomal subunits export to the cytoplasm; Belongs to the SDA1 family.	0.974
A0A178DI70	A0A178DHC2	Utp21-domain-containing protein.	TRASH domain-containing protein.	0.804
A0A178DI70	A0A178DKP0	Utp21-domain-containing protein.	Ribosome biogenesis protein-like protein RPF2.	0.897
A0A178DI70	A0A178DNX9	Utp21-domain-containing protein.	WD40 repeat-like protein.	0.451
A0A178DI70	A0A178DPB1	Utp21-domain-containing protein.	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.	0.983
A0A178DI70	A0A178DZ30	Utp21-domain-containing protein.	Bystin-domain-containing protein.	0.997
A0A178DI70	A0A178E3K9	Utp21-domain-containing protein.	Sas10/Utp3 family protein-like protein.	0.997
A0A178DI70	A0A178E6B5	Utp21-domain-containing protein.	Low temperature viability protein.	0.855
A0A178DI70	A0A178EA30	Utp21-domain-containing protein.	NUC153 domain-containing protein.	0.996
A0A178DI70	A0A178EL17	Utp21-domain-containing protein.	CBF-domain-containing protein.	0.995
A0A178DI70	A0A178EMJ9	Utp21-domain-containing protein.	Protein SDA1; Required for 60S pre-ribosomal subunits export to the cytoplasm; Belongs to the SDA1 family.	0.886