A0A178DPG0 protein (Pyrenochaeta sp. DS3sAY3a)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A178DPG0

Necrosis-and ethylene-inducing protein-like protein 1. (239 aa)

Predicted Functional Partners:

A0A178E1X2

0.646

A0A178EPA3

0.608

A0A178DWK1

0.601

A0A178ELT0

0.561

A0A178DSM1

0.549

A0A178EI25

0.516

A0A178EIZ5

0.491

A0A178DHN8

0.475

A0A178DYH8

0.456

A0A178DQC1

0.454

Your Current Organism:

Pyrenochaeta sp. DS3sAY3a

NCBI taxonomy Id: 765867
Other names: P. sp. DS3sAY3a

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A178DHN8	A0A178DPG0	UcrQ-domain-containing protein.	Necrosis-and ethylene-inducing protein-like protein 1.	0.475
A0A178DHN8	A0A178DQC1	UcrQ-domain-containing protein.	Uncharacterized protein.	0.995
A0A178DHN8	A0A178DSM1	UcrQ-domain-containing protein.	Cytochrome c oxidase subunit VI.	0.998
A0A178DHN8	A0A178DWK1	UcrQ-domain-containing protein.	Uncharacterized protein.	0.998
A0A178DHN8	A0A178DYH8	UcrQ-domain-containing protein.	Cytochrome b-c1 complex subunit 7; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is part of the mitochondrial respiratory chain; Belongs to the UQCRB/QCR7 family.	0.999
A0A178DHN8	A0A178E1X2	UcrQ-domain-containing protein.	Cytochrome c oxidase subunit; This protein is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport.	0.998
A0A178DHN8	A0A178EI25	UcrQ-domain-containing protein.	COX4-domain-containing protein.	0.998
A0A178DHN8	A0A178EIZ5	UcrQ-domain-containing protein.	Uncharacterized protein.	0.998
A0A178DHN8	A0A178ELT0	UcrQ-domain-containing protein.	Cytochrome c oxidase subunit 6A, mitochondrial.	0.999
A0A178DHN8	A0A178EPA3	UcrQ-domain-containing protein.	COX5B-domain-containing protein.	0.999
A0A178DPG0	A0A178DHN8	Necrosis-and ethylene-inducing protein-like protein 1.	UcrQ-domain-containing protein.	0.475
A0A178DPG0	A0A178DQC1	Necrosis-and ethylene-inducing protein-like protein 1.	Uncharacterized protein.	0.454
A0A178DPG0	A0A178DSM1	Necrosis-and ethylene-inducing protein-like protein 1.	Cytochrome c oxidase subunit VI.	0.549
A0A178DPG0	A0A178DWK1	Necrosis-and ethylene-inducing protein-like protein 1.	Uncharacterized protein.	0.601
A0A178DPG0	A0A178DYH8	Necrosis-and ethylene-inducing protein-like protein 1.	Cytochrome b-c1 complex subunit 7; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is part of the mitochondrial respiratory chain; Belongs to the UQCRB/QCR7 family.	0.456
A0A178DPG0	A0A178E1X2	Necrosis-and ethylene-inducing protein-like protein 1.	Cytochrome c oxidase subunit; This protein is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport.	0.646
A0A178DPG0	A0A178EI25	Necrosis-and ethylene-inducing protein-like protein 1.	COX4-domain-containing protein.	0.516
A0A178DPG0	A0A178EIZ5	Necrosis-and ethylene-inducing protein-like protein 1.	Uncharacterized protein.	0.491
A0A178DPG0	A0A178ELT0	Necrosis-and ethylene-inducing protein-like protein 1.	Cytochrome c oxidase subunit 6A, mitochondrial.	0.561
A0A178DPG0	A0A178EPA3	Necrosis-and ethylene-inducing protein-like protein 1.	COX5B-domain-containing protein.	0.608