Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A178A7T4Uncharacterized protein. (176 aa)    
Predicted Functional Partners:
NOP7
Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.
   
  0.494
A0A178B6K9
WD40 repeat-like protein.
   
  0.475
A0A178AKW7
rRNA processing protein Ipi1.
    
 0.467
ERB1
Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.
   
  0.467
A0A178AM35
CP-type G domain-containing protein.
   
  0.463
A0A178BA61
Uncharacterized protein.
  
 
  0.449
A0A178B371
Cysteine proteinase.
    
  0.436
A0A178AQ67
CLP1_P domain-containing protein.
    
  0.431
A0A178APK0
Ribosomal protein L2.
    
  0.430
A0A178AKD5
Uncharacterized protein; Belongs to the universal ribosomal protein uS11 family.
    
  0.426
Your Current Organism:
Stagonospora sp. SRC1lsM3a
NCBI taxonomy Id: 765868
Other names: S. sp. SRC1lsM3a
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