Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A178A936RNB-domain-containing protein. (1056 aa)    
Predicted Functional Partners:
A0A178B1A5
P-loop containing nucleoside triphosphate hydrolase protein.
   
 0.975
A0A178B6S9
Uncharacterized protein.
   
 0.933
A0A178AHW3
Uncharacterized protein.
   
 0.929
A0A178A962
Ribosomal protein S5 domain 2-like protein.
   
 0.928
A0A178AN18
RNase_PH domain-containing protein.
   
 0.928
A0A178ALC1
RNase_PH domain-containing protein.
   
 0.922
A0A178B7T3
RNase_PH domain-containing protein.
   
 0.919
A0A178B655
Uncharacterized protein.
   
 0.917
A0A178A848
ECR1_N domain-containing protein.
   
 0.915
A0A178B941
Uncharacterized protein.
   
 
 0.901
Your Current Organism:
Stagonospora sp. SRC1lsM3a
NCBI taxonomy Id: 765868
Other names: S. sp. SRC1lsM3a
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