Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
A0A178AA94ARM repeat-containing protein. (2688 aa)    
Predicted Functional Partners:
A0A178AMI5
P-loop containing nucleoside triphosphate hydrolase protein.
   
 
 0.986
A0A178B0K1
Kinase-like protein.
   
 
 0.984
A0A178APP3
RWD-domain-containing protein.
    
 
 0.981
A0A178ABF2
P-loop containing nucleoside triphosphate hydrolase protein.
   
 
 0.976
A0A178B057
ARM repeat-containing protein.
   
 0.929
A0A178AW60
60S ribosomal protein L19.
 
 
   0.923
A0A178AL64
Uncharacterized protein.
   
 
 0.914
A0A178B4A3
40S ribosomal protein-like protein S19.
    
 
 0.914
A0A178ANE0
Ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.
   
 
 0.910
A0A178B4P4
BP28CT domain-containing protein.
   
   0.902
Your Current Organism:
Stagonospora sp. SRC1lsM3a
NCBI taxonomy Id: 765868
Other names: S. sp. SRC1lsM3a
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