Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A178AAA2SET domain-containing protein RMS1. (470 aa)    
Predicted Functional Partners:
A0A178B3J3
20S-pre-rRNA D-site endonuclease NOB1; Required for the synthesis of 40S ribosome subunits. Has a role in processing 20S pre-rRNA into the mature 18S rRNA, where it is required for cleavage at the 3' end of the mature 18S rRNA (D-site). Accompanies the 20S pre-rRNA from the nucleus to the cytoplasm. Belongs to the NOB1 family.
   
    0.765
A0A178B627
SET domain-containing protein.
    
 
 0.616
A0A178AZ00
CBM20 domain-containing protein.
     
  0.610
A0A178B7U1
ARM repeat-containing protein.
    
   0.583
A0A178AL64
Uncharacterized protein.
   
    0.572
A0A178AF49
SET domain-containing protein.
    
 
 0.521
A0A178B6Y4
Protein DOM34 homolog; May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non- functional ribosomes and degrade damaged mRNAs.
    
   0.504
A0A178BAQ5
Fe2OG dioxygenase domain-containing protein.
    
   0.503
A0A178ATM9
Phosphatidylinositol transfer protein SFH5.
    
   0.502
RPS1
40S ribosomal protein S1; Belongs to the eukaryotic ribosomal protein eS1 family.
    
   0.500
Your Current Organism:
Stagonospora sp. SRC1lsM3a
NCBI taxonomy Id: 765868
Other names: S. sp. SRC1lsM3a
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