A0A178AAL5 protein (Stagonospora sp. SRC1lsM3a)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

A0A178AAL5

tRNA_int_end_N2 domain-containing protein. (440 aa)

Predicted Functional Partners:

A0A178AW86

0.999

A0A178B1W8

0.999

A0A178B3Z0

0.987

CLP1

0.986

A0A178B6K9

0.977

A0A178AKW7

0.976

A0A178B1S8

0.976

A0A178AIY7

0.975

A0A178ALE1

0.975

A0A178B1R3

0.975

Your Current Organism:

Stagonospora sp. SRC1lsM3a

NCBI taxonomy Id: 765868
Other names: S. sp. SRC1lsM3a

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A178AAL5	A0A178AIY7	A0A178AAL5	A0A178AIY7	tRNA_int_end_N2 domain-containing protein.	Uncharacterized protein.	0.975
A0A178AAL5	A0A178AKW7	A0A178AAL5	A0A178AKW7	tRNA_int_end_N2 domain-containing protein.	rRNA processing protein Ipi1.	0.976
A0A178AAL5	A0A178ALE1	A0A178AAL5	A0A178ALE1	tRNA_int_end_N2 domain-containing protein.	SAGA-associated factor 11; Functions as component of the transcription regulatory histone acetylation (HAT) complex SAGA. At the promoters, SAGA is required for recruitment of the basal transcription machinery. It influences RNA polymerase II transcriptional activity through different activities such as TBP interaction and promoter selectivity, interaction with transcription activators, and chromatin modification through histone acetylation and deubiquitination. SAGA acetylates nucleosomal histone H3 to some extent (to form H3K9ac, H3K14ac, H3K18ac and H3K23ac). SAGA interacts with DNA [...]	0.975
A0A178AAL5	A0A178AW86	A0A178AAL5	A0A178AW86	tRNA_int_end_N2 domain-containing protein.	Sen15 domain-containing protein.	0.999
A0A178AAL5	A0A178B1R3	A0A178AAL5	A0A178B1R3	tRNA_int_end_N2 domain-containing protein.	Ribonuclease P protein subunit.	0.975
A0A178AAL5	A0A178B1S8	A0A178AAL5	A0A178B1S8	tRNA_int_end_N2 domain-containing protein.	Uncharacterized protein.	0.976
A0A178AAL5	A0A178B1W8	A0A178AAL5	A0A178B1W8	tRNA_int_end_N2 domain-containing protein.	tRNA-splicing endonuclease subunit Sen34; Constitutes one of the two catalytic subunit of the tRNA- splicing endonuclease complex, a complex responsible for identification and cleavage of the splice sites in pre-tRNA. It cleaves pre-tRNA at the 5'- and 3'-splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2',3'-cyclic phosphate and 5'-OH termini. There are no conserved sequences at the splice sites, but the intron is invariably located at the same site in the gene, placing the splice sites an invariant distance from the constant structura [...]	0.999
A0A178AAL5	A0A178B3Z0	A0A178AAL5	A0A178B3Z0	tRNA_int_end_N2 domain-containing protein.	tRNA-splicing endonuclease subunit Sen2; Constitutes one of the two catalytic subunit of the tRNA- splicing endonuclease complex, a complex responsible for identification and cleavage of the splice sites in pre-tRNA. It cleaves pre-tRNA at the 5'- and 3'-splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2',3'-cyclic phosphate and 5'-OH termini. There are no conserved sequences at the splice sites, but the intron is invariably located at the same site in the gene, placing the splice sites an invariant distance from the constant structural [...]	0.987
A0A178AAL5	A0A178B6K9	A0A178AAL5	A0A178B6K9	tRNA_int_end_N2 domain-containing protein.	WD40 repeat-like protein.	0.977
A0A178AAL5	CLP1	A0A178AAL5	A0A178B509	tRNA_int_end_N2 domain-containing protein.	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.	0.986
A0A178AIY7	A0A178AAL5	A0A178AIY7	A0A178AAL5	Uncharacterized protein.	tRNA_int_end_N2 domain-containing protein.	0.975
A0A178AIY7	A0A178AKW7	A0A178AIY7	A0A178AKW7	Uncharacterized protein.	rRNA processing protein Ipi1.	0.976
A0A178AIY7	A0A178ALE1	A0A178AIY7	A0A178ALE1	Uncharacterized protein.	SAGA-associated factor 11; Functions as component of the transcription regulatory histone acetylation (HAT) complex SAGA. At the promoters, SAGA is required for recruitment of the basal transcription machinery. It influences RNA polymerase II transcriptional activity through different activities such as TBP interaction and promoter selectivity, interaction with transcription activators, and chromatin modification through histone acetylation and deubiquitination. SAGA acetylates nucleosomal histone H3 to some extent (to form H3K9ac, H3K14ac, H3K18ac and H3K23ac). SAGA interacts with DNA [...]	0.998
A0A178AIY7	A0A178AW86	A0A178AIY7	A0A178AW86	Uncharacterized protein.	Sen15 domain-containing protein.	0.974
A0A178AIY7	A0A178B1R3	A0A178AIY7	A0A178B1R3	Uncharacterized protein.	Ribonuclease P protein subunit.	0.998
A0A178AIY7	A0A178B1S8	A0A178AIY7	A0A178B1S8	Uncharacterized protein.	Uncharacterized protein.	0.998
A0A178AIY7	A0A178B1W8	A0A178AIY7	A0A178B1W8	Uncharacterized protein.	tRNA-splicing endonuclease subunit Sen34; Constitutes one of the two catalytic subunit of the tRNA- splicing endonuclease complex, a complex responsible for identification and cleavage of the splice sites in pre-tRNA. It cleaves pre-tRNA at the 5'- and 3'-splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2',3'-cyclic phosphate and 5'-OH termini. There are no conserved sequences at the splice sites, but the intron is invariably located at the same site in the gene, placing the splice sites an invariant distance from the constant structura [...]	0.883
A0A178AIY7	A0A178B3Z0	A0A178AIY7	A0A178B3Z0	Uncharacterized protein.	tRNA-splicing endonuclease subunit Sen2; Constitutes one of the two catalytic subunit of the tRNA- splicing endonuclease complex, a complex responsible for identification and cleavage of the splice sites in pre-tRNA. It cleaves pre-tRNA at the 5'- and 3'-splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2',3'-cyclic phosphate and 5'-OH termini. There are no conserved sequences at the splice sites, but the intron is invariably located at the same site in the gene, placing the splice sites an invariant distance from the constant structural [...]	0.975
A0A178AIY7	A0A178B6K9	A0A178AIY7	A0A178B6K9	Uncharacterized protein.	WD40 repeat-like protein.	0.982
A0A178AKW7	A0A178AAL5	A0A178AKW7	A0A178AAL5	rRNA processing protein Ipi1.	tRNA_int_end_N2 domain-containing protein.	0.976