A0A178AB50 protein (Stagonospora sp. SRC1lsM3a)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

A0A178AB50

WD40 repeat-like protein. (606 aa)

Predicted Functional Partners:

A0A178B0Z6

0.984

A0A178BFM4

0.976

A0A178AYV1

0.975

A0A178AV92

0.969

A0A178BBP4

0.969

A0A178AXE3

0.919

A0A178AEM4

0.891

A0A178AHP0

0.891

A0A178AM09

0.882

A0A178ABB5

0.857

Your Current Organism:

Stagonospora sp. SRC1lsM3a

NCBI taxonomy Id: 765868
Other names: S. sp. SRC1lsM3a

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A178AB50	A0A178ABB5	WD40 repeat-like protein.	Bromo domain-containing protein.	0.857
A0A178AB50	A0A178AEM4	WD40 repeat-like protein.	Uncharacterized protein.	0.891
A0A178AB50	A0A178AHP0	WD40 repeat-like protein.	Uncharacterized protein; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.	0.891
A0A178AB50	A0A178AM09	WD40 repeat-like protein.	Actin-related protein-like protein 3; Belongs to the actin family.	0.882
A0A178AB50	A0A178AV92	WD40 repeat-like protein.	Actin, gamma.	0.969
A0A178AB50	A0A178AXE3	WD40 repeat-like protein.	Actin/actin-like protein; Belongs to the actin family.	0.919
A0A178AB50	A0A178AYV1	WD40 repeat-like protein.	Adenylyl cyclase-associated protein; Belongs to the CAP family.	0.975
A0A178AB50	A0A178B0Z6	WD40 repeat-like protein.	Cofilin; Belongs to the actin-binding proteins ADF family.	0.984
A0A178AB50	A0A178BBP4	WD40 repeat-like protein.	Actin-domain-containing protein; Belongs to the actin family.	0.969
A0A178AB50	A0A178BFM4	WD40 repeat-like protein.	F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.	0.976
A0A178ABB5	A0A178AB50	Bromo domain-containing protein.	WD40 repeat-like protein.	0.857
A0A178AEM4	A0A178AB50	Uncharacterized protein.	WD40 repeat-like protein.	0.891
A0A178AEM4	A0A178AM09	Uncharacterized protein.	Actin-related protein-like protein 3; Belongs to the actin family.	0.743
A0A178AEM4	A0A178AV92	Uncharacterized protein.	Actin, gamma.	0.651
A0A178AEM4	A0A178AXE3	Uncharacterized protein.	Actin/actin-like protein; Belongs to the actin family.	0.630
A0A178AEM4	A0A178B0Z6	Uncharacterized protein.	Cofilin; Belongs to the actin-binding proteins ADF family.	0.877
A0A178AEM4	A0A178BBP4	Uncharacterized protein.	Actin-domain-containing protein; Belongs to the actin family.	0.651
A0A178AEM4	A0A178BFM4	Uncharacterized protein.	F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.	0.991
A0A178AHP0	A0A178AB50	Uncharacterized protein; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.	WD40 repeat-like protein.	0.891
A0A178AHP0	A0A178AM09	Uncharacterized protein; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.	Actin-related protein-like protein 3; Belongs to the actin family.	0.743