A0A178AB61 protein (Stagonospora sp. SRC1lsM3a)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

A0A178AB61

PH domain-containing protein. (922 aa)

Predicted Functional Partners:

A0A178ABA1

0.873

A0A178ASZ5

0.859

A0A178AB43

0.854

A0A178AEE7

0.820

A0A178BD33

0.816

ALA1

0.813

A0A178AP10

0.810

A0A178AZ51

0.808

A0A178ASP7

0.805

A0A178AAS9

0.783

Your Current Organism:

Stagonospora sp. SRC1lsM3a

NCBI taxonomy Id: 765868
Other names: S. sp. SRC1lsM3a

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A178AAS9	A0A178AB61	A0A178AAS9	A0A178AB61	Glycyl-tRNA synthetase.	PH domain-containing protein.	0.783
A0A178AAS9	A0A178ABA1	A0A178AAS9	A0A178ABA1	Glycyl-tRNA synthetase.	Leucyl-tRNA synthetase.	0.855
A0A178AAS9	A0A178AP10	A0A178AAS9	A0A178AP10	Glycyl-tRNA synthetase.	Lysyl-tRNA synthetase.	0.886
A0A178AAS9	A0A178AZ51	A0A178AAS9	A0A178AZ51	Glycyl-tRNA synthetase.	Glutaminyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.946
A0A178AAS9	A0A178BD33	A0A178AAS9	A0A178BD33	Glycyl-tRNA synthetase.	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.849
A0A178AAS9	ALA1	A0A178AAS9	A0A178BBF5	Glycyl-tRNA synthetase.	Alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain. Belongs to the class-II aminoacyl-tRNA synthetase family.	0.963
A0A178AB43	A0A178AB61	A0A178AB43	A0A178AB61	Ankyrin.	PH domain-containing protein.	0.854
A0A178AB43	A0A178ASZ5	A0A178AB43	A0A178ASZ5	Ankyrin.	Uncharacterized protein.	0.997
A0A178AB61	A0A178AAS9	A0A178AB61	A0A178AAS9	PH domain-containing protein.	Glycyl-tRNA synthetase.	0.783
A0A178AB61	A0A178AB43	A0A178AB61	A0A178AB43	PH domain-containing protein.	Ankyrin.	0.854
A0A178AB61	A0A178ABA1	A0A178AB61	A0A178ABA1	PH domain-containing protein.	Leucyl-tRNA synthetase.	0.873
A0A178AB61	A0A178AEE7	A0A178AB61	A0A178AEE7	PH domain-containing protein.	Glutaredoxin; Belongs to the glutaredoxin family. Monothiol subfamily.	0.820
A0A178AB61	A0A178AP10	A0A178AB61	A0A178AP10	PH domain-containing protein.	Lysyl-tRNA synthetase.	0.810
A0A178AB61	A0A178ASP7	A0A178AB61	A0A178ASP7	PH domain-containing protein.	Mitochondrial glyco protein.	0.805
A0A178AB61	A0A178ASZ5	A0A178AB61	A0A178ASZ5	PH domain-containing protein.	Uncharacterized protein.	0.859
A0A178AB61	A0A178AZ51	A0A178AB61	A0A178AZ51	PH domain-containing protein.	Glutaminyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.808
A0A178AB61	A0A178BD33	A0A178AB61	A0A178BD33	PH domain-containing protein.	Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.816
A0A178AB61	ALA1	A0A178AB61	A0A178BBF5	PH domain-containing protein.	Alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain. Belongs to the class-II aminoacyl-tRNA synthetase family.	0.813
A0A178ABA1	A0A178AAS9	A0A178ABA1	A0A178AAS9	Leucyl-tRNA synthetase.	Glycyl-tRNA synthetase.	0.855
A0A178ABA1	A0A178AB61	A0A178ABA1	A0A178AB61	Leucyl-tRNA synthetase.	PH domain-containing protein.	0.873