Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A178ABA0Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family. (165 aa)    
Predicted Functional Partners:
A0A178AEX1
60S ribosomal protein L5-B.
  
 0.994
A0A178AUY6
L30e-like protein.
   
 0.994
A0A178AE32
Uncharacterized protein.
  
 0.993
A0A178AF42
L30e-like protein.
  
 0.993
A0A178B0I0
60S ribosomal protein-like protein L23a.
  
 0.993
A0A178B366
Ribosomal protein L6.
  
 0.993
A0A178B5D5
Ribosomal protein L22e.
   
 0.993
A0A178B6F6
60S ribosomal protein-like protein L2/L8.
  
 0.993
A0A178B842
Uncharacterized protein.
   
 0.993
A0A178A8B4
Ribosomal protein L13.
  
 0.992
Your Current Organism:
Stagonospora sp. SRC1lsM3a
NCBI taxonomy Id: 765868
Other names: S. sp. SRC1lsM3a
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