Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
A0A178ABH3Uncharacterized protein. (717 aa)    
Predicted Functional Partners:
A0A178B8S7
Exportin-T; tRNA nucleus export receptor which facilitates tRNA translocation across the nuclear pore complex. Belongs to the exportin family.
   
 
 0.952
A0A178ANJ0
TYW3 domain-containing protein.
      
 0.646
A0A178B6B1
tRNA pseudouridine synthase D.
      
 0.646
A0A178ASM8
TRM-domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Trm1 family.
      
 0.536
A0A178B6C8
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
   
  
 0.526
A0A178AXM1
Pseudouridine synthase.
      
 0.524
A0A178B748
IF-2B-domain-containing protein; Belongs to the eIF-2B alpha/beta/delta subunits family.
    
   0.502
A0A178AHQ2
Uncharacterized protein.
    
   0.468
A0A178ATC7
MIF4G domain-containing protein.
    
   0.468
A0A178AV54
Histone deacetylase; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events.
   
  
 0.422
Your Current Organism:
Stagonospora sp. SRC1lsM3a
NCBI taxonomy Id: 765868
Other names: S. sp. SRC1lsM3a
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